PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_000297-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ZF-HD
Protein Properties Length: 138aa    MW: 15449.4 Da    PI: 10.043
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_000297-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer28.34.1e-092164357
    ZF-HD_dimer 43 CaACgCHRnFHRrev 57
                   C ACgCHRnFHR+  
  NNU_000297-RA  2 CEACGCHRNFHRKVI 16
                   ************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047707.6E-6215IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.7E-2953123IPR009057Homeodomain-like
SuperFamilySSF466893.41E-1754121IPR009057Homeodomain-like
TIGRFAMsTIGR015654.0E-2863121IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MCEACGCHRN FHRKVIVLGG GGGRGGSNSN NNRARDAEVV EMMDYASTQP AMMVESQEDR  60
SGKKRMRTKF TAEQKEKMLA FAEKLGWRIQ RRDQEDEIEK FCKAVGVSRQ VFKVWMHNHK  120
NSSSSSSAST GNASSLTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-25641261879ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010243781.11e-99PREDICTED: zinc-finger homeodomain protein 1-like
SwissprotQ9SB613e-30ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLA0A0A0LQK42e-55A0A0A0LQK4_CUCSA; Zinc finger homeodomain protein SZF-HD1
TrEMBLB9I4V42e-55B9I4V4_POPTR; Uncharacterized protein (Fragment)
STRINGPOPTR_0012s03770.15e-55(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-27homeobox protein 22